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Slin_1688 protein (Spirosoma linguale) - STRING interaction network
"Slin_1688" - TrmA family RNA methyltransferase in Spirosoma linguale
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1688TrmA family RNA methyltransferase (476 aa)    
Predicted Functional Partners:
Slin_0362
Maf protein (178 aa)
        0.841
Slin_1744
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (252 aa)
 
   
  0.720
Slin_5890
Fmu (Sun) domain-containing protein (453 aa)
   
 
  0.717
Slin_0785
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (252 aa)
   
   
  0.670
Slin_5857
Cysteine synthase B (290 aa)
   
      0.665
Slin_5829
Cystathionine beta-synthase (458 aa)
   
      0.665
Slin_4776
Pyridoxal-5’-phosphate-dependent protein subunit beta (355 aa)
   
      0.665
Slin_1589
Cysteine synthase (302 aa)
   
      0.665
Slin_1687
Hypothetical protein (751 aa)
              0.655
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (253 aa)
   
      0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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