STRINGSTRING
Slin_1703 protein (Spirosoma linguale) - STRING interaction network
"Slin_1703" - Lipoprotein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1703Lipoprotein (442 aa)    
Predicted Functional Partners:
Slin_1702
TonB-dependent receptor plug (1016 aa)
 
          0.942
Slin_6529
TonB-dependent receptor plug (1075 aa)
 
          0.760
Slin_5059
TonB-dependent receptor plug (1047 aa)
 
          0.752
Slin_5062
TonB-dependent receptor plug (1037 aa)
 
          0.745
Slin_4505
TonB-dependent receptor plug (1046 aa)
 
          0.745
Slin_0203
TonB-dependent receptor plug (1047 aa)
 
          0.720
Slin_4238
TonB-dependent receptor plug (1101 aa)
 
          0.709
Slin_6530
RagB/SusD domain-containing protein (521 aa)
   
          0.709
Slin_0206
TonB-dependent receptor plug (1064 aa)
 
          0.694
Slin_5655
TonB-dependent receptor plug (1164 aa)
 
          0.677
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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