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Slin_1725 protein (Spirosoma linguale) - STRING interaction network
"Slin_1725" - NAD-dependent epimerase/dehydratase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1725NAD-dependent epimerase/dehydratase (214 aa)    
Predicted Functional Partners:
Slin_1726
BadM/Rrf2 family transcriptional regulator (135 aa)
 
          0.822
Slin_1727
Hypothetical protein (145 aa)
              0.499
Slin_5907
HxlR family transcriptional regulator (112 aa)
   
   
  0.486
Slin_4654
HxlR family transcriptional regulator (110 aa)
   
   
  0.486
Slin_3740
HxlR family transcriptional regulator (127 aa)
   
   
  0.486
Slin_3738
HxlR family transcriptional regulator (131 aa)
   
   
  0.486
Slin_2078
HxlR family transcriptional regulator (141 aa)
   
   
  0.486
Slin_0941
HxlR family transcriptional regulator (134 aa)
   
   
  0.486
Slin_0881
HxlR family transcriptional regulator (122 aa)
   
   
  0.486
Slin_0880
HxlR family transcriptional regulator (118 aa)
   
   
  0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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