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Slin_1756 protein (Spirosoma linguale) - STRING interaction network
"Slin_1756" - Class V aminotransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1756Class V aminotransferase (438 aa)    
Predicted Functional Partners:
Slin_3608
FeS assembly protein SufB (497 aa)
 
 
  0.892
Slin_0163
Fe-S metabolism associated SufE (147 aa)
   
 
  0.877
Slin_0174
FeS assembly protein SufD (441 aa)
 
 
  0.875
Slin_0175
FeS assembly ATPase SufC (251 aa)
 
   
  0.831
Slin_5822
Iron-sulfur cluster assembly accessory protein (108 aa)
   
 
  0.661
Slin_1755
Hypothetical protein (212 aa)
              0.601
Slin_5341
Hypothetical protein (300 aa)
   
          0.572
Slin_1497
Cysteine desulfurase (389 aa)
 
   
  0.553
Slin_3463
UBA/THIF-type NAD/FAD binding protein (379 aa)
 
   
  0.536
Slin_6576
UBA/THIF-type NAD/FAD binding protein (348 aa)
 
   
  0.526
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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