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Slin_1769 protein (Spirosoma linguale) - STRING interaction network
"Slin_1769" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1769TonB-dependent receptor plug (1085 aa)    
Predicted Functional Partners:
Slin_4223
Hypothetical protein (542 aa)
 
          0.790
Slin_3992
Hypothetical protein (532 aa)
   
          0.776
Slin_4231
Lantibiotic dehydratase domain-containing protein (962 aa)
   
          0.745
Slin_6142
TonB-dependent receptor (857 aa)
   
          0.737
Slin_4506
Hypothetical protein (436 aa)
   
          0.727
Slin_4221
RagB/SusD domain-containing protein (457 aa)
   
          0.724
Slin_3419
RagB/SusD domain-containing protein (521 aa)
   
          0.709
Slin_3421
RagB/SusD domain-containing protein (521 aa)
   
          0.708
Slin_2758
Hypothetical protein (170 aa)
   
          0.704
Slin_4641
Hypothetical protein (836 aa)
   
          0.701
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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