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Slin_1826 protein (Spirosoma linguale) - STRING interaction network
"Slin_1826" - BadM/Rrf2 family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1826BadM/Rrf2 family transcriptional regulator (153 aa)    
Predicted Functional Partners:
Slin_1825
Hypothetical protein (411 aa)
 
          0.958
Slin_1827
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron-sulfur clusters (242 aa)
 
   
  0.825
Slin_4125
Heat shock protein DnaJ domain-containing protein (247 aa)
   
 
  0.560
Slin_1824
Hypothetical protein (229 aa)
              0.533
Slin_4680
Cysteine desulfurase (372 aa)
   
   
  0.530
Slin_4051
Cysteine desulfurase (380 aa)
   
   
  0.530
Slin_1497
Cysteine desulfurase (389 aa)
   
   
  0.530
Slin_0339
Hypothetical protein (230 aa)
   
          0.496
Slin_5822
Iron-sulfur cluster assembly accessory protein (108 aa)
   
   
  0.491
Slin_5188
Oxidoreductase FAD/NAD(P)-binding domain-containing protein (356 aa)
         
  0.457
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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