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Slin_1830 protein (Spirosoma linguale) - STRING interaction network
"Slin_1830" - Glucose/sorbosone dehydrogenase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1830Glucose/sorbosone dehydrogenase (442 aa)    
Predicted Functional Partners:
Slin_3203
Gluconolactonase (342 aa)
 
     
    0.905
Slin_2519
Gluconolactonase (545 aa)
 
     
    0.900
Slin_1831
Short-chain dehydrogenase/reductase SDR (259 aa)
              0.585
Slin_1829
Dihydroxy-acid dehydratase (568 aa)
              0.484
Slin_4228
Lanthionine synthetase C family protein (661 aa)
   
          0.428
Slin_3273
Hypothetical protein (345 aa)
 
            0.426
Slin_4183
GHMP kinase (347 aa)
   
          0.402
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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