STRINGSTRING
Slin_1838 protein (Spirosoma linguale) - STRING interaction network
"Slin_1838" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1838ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (230 aa)    
Predicted Functional Partners:
Slin_1839
Hypothetical protein (416 aa)
 
  0.988
Slin_0794
Hypothetical protein (412 aa)
  0.986
Slin_4653
Hypothetical protein (413 aa)
  0.986
Slin_2349
Hypothetical protein (415 aa)
  0.979
Slin_5020
Hypothetical protein (418 aa)
   
  0.975
Slin_1762
ABC transporter (218 aa)
   
   
 
0.952
Slin_0799
ABC transporter (353 aa)
 
   
0.950
Slin_2342
ABC transporter (274 aa)
   
   
 
0.948
Slin_1564
ABC transporter (259 aa)
 
 
 
0.948
Slin_5572
ABC transporter (593 aa)
 
0.943
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]