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Slin_1884 protein (Spirosoma linguale) - STRING interaction network
"Slin_1884" - Circadian clock protein KaiC in Spirosoma linguale
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Slin_1884Circadian clock protein KaiC (569 aa)    
Predicted Functional Partners:
Slin_1883
KaiB domain-containing protein (97 aa)
 
     
  0.940
Slin_1882
KaiB domain-containing protein (106 aa)
 
     
  0.902
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (364 aa)
       
  0.763
Slin_2138
PAS/PAC sensor protein (849 aa)
 
     
  0.654
Slin_1881
PAS/PAC sensor signal transduction histidine kinase (435 aa)
         
  0.612
Slin_3510
Hypothetical protein (116 aa)
   
          0.495
Slin_3485
UbiA prenyltransferase (291 aa)
   
          0.434
Slin_1885
Hypothetical protein (440 aa)
              0.422
Slin_1886
Hypothetical protein (115 aa)
              0.412
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (894 aa)
       
 
  0.410
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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