STRINGSTRING
Slin_1903 protein (Spirosoma linguale) - STRING interaction network
"Slin_1903" - Carbohydrate binding family 6 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1903Carbohydrate binding family 6 (918 aa)    
Predicted Functional Partners:
Slin_4674
Hypothetical protein (279 aa)
          0.810
Slin_0159
TatD-related deoxyribonuclease (310 aa)
 
          0.760
Slin_5485
Cytochrome C class I (561 aa)
   
          0.759
Slin_0082
Type I phosphodiesterase/nucleotide pyrophosphatase (462 aa)
 
          0.758
Slin_0069
Crp/FNR family transcriptional regulator (277 aa)
          0.754
Slin_0083
Hypothetical protein (407 aa)
 
          0.752
Slin_6210
Heme-binding protein (1141 aa)
   
          0.736
Slin_4773
Cytochrome C class I (669 aa)
   
          0.729
Slin_0160
UbiA prenyltransferase (291 aa)
 
          0.705
Slin_3985
Dehydrogenase (852 aa)
 
          0.697
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]