STRINGSTRING
Slin_1914 protein (Spirosoma linguale) - STRING interaction network
"Slin_1914" - Class I and II aminotransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1914Class I and II aminotransferase (403 aa)    
Predicted Functional Partners:
ilvD
Dihydroxy-acid dehydratase (569 aa)
   
 
  0.915
Slin_1829
Dihydroxy-acid dehydratase (568 aa)
   
 
  0.915
Slin_5897
Pyruvate carboxyltransferase (379 aa)
   
 
  0.914
Slin_5648
Glu/Leu/Phe/Val dehydrogenase (424 aa)
   
 
  0.913
Slin_1098
Branched-chain amino acid aminotransferase (356 aa)
   
 
  0.868
Slin_4767
Isocitrate dehydrogenase (405 aa)
   
 
  0.842
Slin_3335
Isocitrate dehydrogenase (482 aa)
   
  0.839
Slin_4514
Aspartate kinase (818 aa)
   
 
  0.834
Slin_5563
Class IV aminotransferase (283 aa)
   
 
  0.830
Slin_5009
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (252 aa)
     
    0.829
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]