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Slin_1934 protein (Spirosoma linguale) - STRING interaction network
"Slin_1934" - Muconate lactonizing mandelate racemase protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1934Muconate lactonizing mandelate racemase protein (355 aa)    
Predicted Functional Partners:
Slin_1935
Hypothetical protein (354 aa)
          0.963
Slin_0611
Muconate lactonizing mandelate racemase protein (377 aa)
   
          0.776
Slin_6193
Muconate lactonizing mandelate racemase protein (425 aa)
 
          0.751
Slin_1933
Hypothetical protein (315 aa)
 
          0.706
Slin_3945
Muconate lactonizing mandelate racemase protein (413 aa)
   
          0.682
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
   
  0.681
Slin_3949
Muconate lactonizing mandelate racemase protein (388 aa)
 
          0.670
Slin_1535
3-oxoadipate enol-lactonase (373 aa)
   
   
  0.667
Slin_3948
Muconate lactonizing mandelate racemase protein (451 aa)
 
          0.627
Slin_6070
Galactonate dehydratase (474 aa)
 
          0.625
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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