STRINGSTRING
Slin_1945 protein (Spirosoma linguale) - STRING interaction network
"Slin_1945" - alpha-L-rhamnosidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1945alpha-L-rhamnosidase (819 aa)    
Predicted Functional Partners:
Slin_3580
alpha-L-rhamnosidase (918 aa)
 
     
  0.752
Slin_1944
Carboxylesterase (553 aa)
 
          0.750
Slin_1249
alpha-L-rhamnosidase (951 aa)
 
     
  0.709
Slin_1470
Hypothetical protein (419 aa)
   
        0.656
Slin_2456
G-D-S-L family lipolytic protein (219 aa)
   
          0.642
Slin_6449
Hypothetical protein (857 aa)
   
          0.629
Slin_2648
ADP-ribosylation/crystallin J1 (543 aa)
   
          0.627
Slin_4223
Hypothetical protein (542 aa)
   
          0.602
Slin_1879
Hypothetical protein (629 aa)
   
          0.578
Slin_2926
Heavy metal transport/detoxification protein (71 aa)
   
          0.574
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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