STRINGSTRING
Slin_1953 protein (Spirosoma linguale) - STRING interaction network
"Slin_1953" - Integrase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1953Integrase family protein (405 aa)    
Predicted Functional Partners:
Slin_1970
Hypothetical protein (306 aa)
   
          0.757
Slin_6432
RagB/SusD domain-containing protein (542 aa)
   
          0.742
Slin_1176
Hypothetical protein (120 aa)
   
          0.725
Slin_4978
RagB/SusD domain-containing protein (576 aa)
   
          0.702
Slin_3868
CRISPR-associated protein TM1801 (307 aa)
   
          0.699
Slin_1312
Hypothetical protein (169 aa)
   
          0.687
Slin_5832
Hypothetical protein (102 aa)
   
          0.680
Slin_3867
CRISPR-associated protein Cas5 (266 aa)
   
          0.675
Slin_6227
Hypothetical protein (420 aa)
   
          0.672
Slin_5872
Integrase family protein (433 aa)
   
          0.643
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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