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Slin_2000 protein (Spirosoma linguale) - STRING interaction network
"Slin_2000" - XRE family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2000XRE family transcriptional regulator (172 aa)    
Predicted Functional Partners:
Slin_4984
Phospholipid/glycerol acyltransferase (251 aa)
   
          0.744
Slin_2040
Sporulation domain-containing protein (380 aa)
   
          0.738
Slin_4064
Hypothetical protein (180 aa)
   
          0.720
Slin_2385
Hypothetical protein (901 aa)
   
          0.707
Slin_2892
Hypothetical protein (757 aa)
   
          0.703
Slin_0364
Hypothetical protein (683 aa)
   
          0.686
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.671
Slin_1212
Endonuclease/exonuclease/phosphatase (372 aa)
   
          0.669
Slin_5097
Hypothetical protein (727 aa)
   
          0.650
Slin_1511
TonB-dependent receptor (772 aa)
   
          0.625
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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