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Slin_2023 protein (Spirosoma linguale) - STRING interaction network
"Slin_2023" - N-acetyltransferase GCN5 in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2023N-acetyltransferase GCN5 (177 aa)    
Predicted Functional Partners:
Slin_2022
Major facilitator superfamily protein (440 aa)
              0.738
Slin_2021
XRE family transcriptional regulator (500 aa)
              0.554
Slin_2020
Muconate lactonizing mandelate racemase protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) (366 aa)
              0.531
Slin_2024
Hypothetical protein (141 aa)
              0.529
Slin_0258
Hypothetical protein (210 aa)
   
          0.476
Slin_1739
ABC transporter (305 aa)
   
          0.470
Slin_1740
ABC-type Na+ efflux pump permease-like protein (441 aa)
   
          0.469
Slin_2143
AraC family transcriptional regulator (269 aa)
   
          0.457
lpxK
Tetraacyldisaccharide 4’-kinase; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (355 aa)
              0.413
Slin_2018
Hypothetical protein (686 aa)
              0.413
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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