STRINGSTRING
Slin_2025 protein (Spirosoma linguale) - STRING interaction network
"Slin_2025" - Aconitate hydratase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2025Aconitate hydratase (755 aa)    
Predicted Functional Partners:
Slin_5036
Citrate synthase I (428 aa)
 
  0.988
Slin_3335
Isocitrate dehydrogenase (482 aa)
 
  0.974
Slin_4313
Isocitrate dehydrogenase (456 aa)
 
  0.974
Slin_4767
Isocitrate dehydrogenase (405 aa)
   
  0.961
Slin_5027
2-oxoglutarate dehydrogenase, E1 subunit (932 aa)
   
 
  0.910
atpD
ATP synthase F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (508 aa)
   
 
  0.804
Slin_4914
Transketolase (801 aa)
 
 
  0.745
fumC
Class II fumarate hydratase (466 aa)
 
 
  0.743
Slin_2319
Glutamate synthase (1524 aa)
   
   
  0.731
Slin_3485
UbiA prenyltransferase (291 aa)
       
  0.707
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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