STRINGSTRING
Slin_2040 protein (Spirosoma linguale) - STRING interaction network
"Slin_2040" - Sporulation domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2040Sporulation domain-containing protein (380 aa)    
Predicted Functional Partners:
Slin_2039
Hypothetical protein (558 aa)
              0.821
Slin_1309
Hypothetical protein (614 aa)
   
          0.755
Slin_5211
Hypothetical protein (333 aa)
   
          0.738
Slin_3465
Hypothetical protein (350 aa)
   
          0.738
Slin_2000
XRE family transcriptional regulator (172 aa)
   
          0.738
Slin_1687
Hypothetical protein (751 aa)
   
          0.719
Slin_5971
Amidophosphoribosyltransferase (630 aa)
   
          0.700
Slin_5230
PKD domain-containing protein (1222 aa)
   
          0.698
Slin_1398
Hypothetical protein (799 aa)
   
          0.698
Slin_1161
Hypothetical protein (831 aa)
   
          0.691
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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