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Slin_2048 protein (Spirosoma linguale) - STRING interaction network
"Slin_2048" - General substrate transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2048General substrate transporter (539 aa)    
Predicted Functional Partners:
Slin_2049
Hypothetical protein (455 aa)
              0.817
Slin_2840
Major facilitator superfamily protein (415 aa)
   
          0.592
Slin_3633
Major facilitator superfamily protein (415 aa)
   
          0.579
Slin_2050
Insertion element protein (139 aa)
 
          0.567
Slin_2047
Hypothetical protein (72 aa)
              0.560
Slin_2045
Histidine kinase (906 aa)
   
   
  0.508
Slin_3636
Major facilitator superfamily protein (411 aa)
   
          0.465
Slin_2043
AMP-dependent synthetase and ligase (638 aa)
 
   
  0.430
Slin_3632
Major facilitator superfamily protein (422 aa)
   
          0.415
Slin_2042
acetate/CoA ligase (636 aa)
 
   
  0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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