STRINGSTRING
Slin_2103 protein (Spirosoma linguale) - STRING interaction network
"Slin_2103" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2103TonB-dependent receptor plug (966 aa)    
Predicted Functional Partners:
Slin_2104
RagB/SusD domain-containing protein (581 aa)
 
          0.956
Slin_2102
RagB/SusD domain-containing protein (617 aa)
 
          0.921
Slin_2106
Glycoside hydrolase family protein (558 aa)
 
          0.896
Slin_2107
AraC family transcriptional regulator (1349 aa)
 
          0.828
Slin_1418
Hypothetical protein (284 aa)
   
          0.778
Slin_1419
Glycoside hydrolase (648 aa)
   
          0.757
Slin_1407
Esterase (640 aa)
   
          0.732
Slin_1411
Esterase (372 aa)
   
          0.717
Slin_1408
Esterase (388 aa)
   
          0.714
Slin_6081
Glycoside hydrolase family protein (480 aa)
   
          0.713
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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