STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2108PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: scl:sce3304 putative xylosidase/arabinosidase. (650 aa)    
Predicted Functional Partners:
Slin_1423
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_1655 translation initiation factor IF- 1; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.927
Slin_2639
PFAM: glycoside hydrolase family 43; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.922
Slin_3360
PFAM: glycoside hydrolase family 43; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.918
Slin_1416
PFAM: glycoside hydrolase family 39; KEGG: rle:RL4418 putative beta-xylosidase.
     
 0.900
Slin_3934
PFAM: glycoside hydrolase family 39; KEGG: rle:RL4418 putative beta-xylosidase.
     
 0.900
Slin_4540
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 43; Fibronectin type III domain protein; KEGG: xylosidase : arabinofuranosidase.
     
  0.900
uxaC
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
    
 0.804
uxaC-2
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
    
 0.804
Slin_2419
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.802
Slin_4183
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: zgc:172049.
     
  0.800
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.