STRINGSTRING
Slin_2129 protein (Spirosoma linguale) - STRING interaction network
"Slin_2129" - Peptidase C10 streptopain in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2129Peptidase C10 streptopain (405 aa)    
Predicted Functional Partners:
Slin_2128
Hypothetical protein (181 aa)
              0.835
Slin_1398
Hypothetical protein (799 aa)
   
          0.700
Slin_4634
Hypothetical protein (288 aa)
   
          0.699
Slin_4659
Hypothetical protein (390 aa)
   
          0.628
Slin_1885
Hypothetical protein (440 aa)
   
          0.625
Slin_0781
ABC transporter (827 aa)
   
          0.620
Slin_2312
Hypothetical protein (526 aa)
   
          0.612
Slin_0214
Hypothetical protein (389 aa)
   
          0.600
Slin_1304
Hypothetical protein (301 aa)
   
          0.581
Slin_1225
Hypothetical protein (801 aa)
   
          0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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