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Slin_2221 protein (Spirosoma linguale) - STRING interaction network
"Slin_2221" - SAM dependent methyltransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2221SAM dependent methyltransferase (297 aa)    
Predicted Functional Partners:
Slin_2220
Hypothetical protein (430 aa)
   
        0.863
Slin_2222
Hypothetical protein (147 aa)
              0.690
Slin_0993
tRNA/rRNA methyltransferase SpoU (248 aa)
 
      0.681
thrS
threonyl-tRNA synthetase (647 aa)
   
        0.570
Slin_3136
TrmH family RNA methyltransferase (276 aa)
   
      0.533
Slin_0514
tRNA/rRNA methyltransferase SpoU (176 aa)
   
      0.533
Slin_0543
DNA polymerase I (1024 aa)
   
      0.499
Slin_4400
Pseudouridine synthase (248 aa)
 
 
  0.498
Slin_2223
Hypothetical protein (191 aa)
              0.479
Slin_5522
Threonine synthase (435 aa)
   
        0.402
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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