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Slin_2230 protein (Spirosoma linguale) - STRING interaction network
"Slin_2230" - Hypothetical protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2230Hypothetical protein (417 aa)    
Predicted Functional Partners:
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (246 aa)
              0.864
Slin_5066
TonB-dependent receptor plug (1001 aa)
   
          0.725
Slin_4475
TonB-dependent receptor (955 aa)
   
          0.715
Slin_3523
TonB family protein (143 aa)
   
          0.715
Slin_2229
Acetyl xylan esterase (441 aa)
              0.712
Slin_5378
TonB family protein (156 aa)
   
          0.655
Slin_4417
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (485 aa)
   
          0.637
Slin_2232
Transcriptional coactivator/pterin dehydratase (77 aa)
              0.632
Slin_3522
TonB family protein (150 aa)
   
          0.626
Slin_0206
TonB-dependent receptor plug (1064 aa)
   
          0.606
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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