STRINGSTRING
Slin_2255 protein (Spirosoma linguale) - STRING interaction network
"Slin_2255" - Signal transduction histidine kinase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2255Signal transduction histidine kinase (648 aa)    
Predicted Functional Partners:
Slin_3427
LytTR family transcriptional regulator (256 aa)
     
  0.853
Slin_3896
LytTR family transcriptional regulator (245 aa)
     
  0.852
Slin_2254
PAS/PAC sensor signal transduction histidine kinase (829 aa)
         
  0.773
Slin_2256
methylmalonyl-CoA mutase (1110 aa)
              0.628
Slin_2253
Hypothetical protein (96 aa)
              0.546
Slin_1380
Ethanolamine ammonia-lyase (459 aa)
 
          0.489
Slin_1381
Ethanolamine ammonia-lyase (262 aa)
 
          0.482
Slin_5961
ECF subfamily RNA polymerase sigma-24 subunit (171 aa)
 
          0.417
Slin_3917
PAS/PAC sensor signal transduction histidine kinase (683 aa)
         
  0.409
Slin_0386
PAS/PAC sensor signal transduction histidine kinase (674 aa)
       
  0.409
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (20%) [HD]