STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2354PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_2119 alcohol dehydrogenase, zinc- binding. (325 aa)    
Predicted Functional Partners:
Slin_5640
PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_0947 MaoC-like dehydratase.
 
 0.959
Slin_5012
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase.
 
    
 0.906
Slin_5149
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.890
Slin_1780
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acp:A2cp1_4094 thioredoxin reductase.
 
    
 0.830
Slin_1393
PFAM: aminoglycoside phosphotransferase; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase.
 
   0.750
Slin_1392
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: dat:HRM2_03010 acyl-CoA dehydrogenase (ACAD) / acyl-CoA oxidase-like protein.
 
 
 0.653
Slin_1313
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amc:MADE_01007 short chain dehydrogenase.
  
   0.417
Slin_0804
KEGG: spe:Spro_0245 protein tyrosine/serine phosphatase.
 
    0.412
Slin_3535
Glycine C-acetyltransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: gbm:Gbem_0049 pyridoxal phosphate-dependent acyltransferase.
  
 
 0.407
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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