STRINGSTRING
Slin_2376 protein (Spirosoma linguale) - STRING interaction network
"Slin_2376" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2376TonB-dependent receptor plug (797 aa)    
Predicted Functional Partners:
Slin_4333
FG-GAP repeat-containing protein (758 aa)
   
          0.690
Slin_5341
Hypothetical protein (300 aa)
   
          0.575
Slin_1871
Hypothetical protein (794 aa)
   
          0.572
Slin_0604
Oxidoreductase domain-containing protein (327 aa)
   
          0.564
Slin_2375
ECF subfamily RNA polymerase sigma-24 subunit (213 aa)
              0.562
Slin_2374
anti-FecI sigma factor FecR (351 aa)
              0.562
Slin_6214
Oxidoreductase domain-containing protein (340 aa)
   
          0.521
Slin_2819
Outer membrane efflux protein (438 aa)
   
          0.490
Slin_1398
Hypothetical protein (799 aa)
   
          0.486
Slin_0263
Hypothetical protein (905 aa)
   
          0.482
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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