STRINGSTRING
Slin_2398 protein (Spirosoma linguale) - STRING interaction network
"Slin_2398" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2398TonB-dependent receptor plug (932 aa)    
Predicted Functional Partners:
Slin_2400
Hypothetical protein (340 aa)
 
          0.864
Slin_2399
Hypothetical protein (433 aa)
              0.784
Slin_5438
Cell surface receptor IPT/TIG domain-containing protein (561 aa)
   
          0.740
Slin_4979
TonB-dependent receptor plug (1188 aa)
   
          0.732
Slin_4371
Cell surface receptor IPT/TIG domain-containing protein (561 aa)
   
          0.720
Slin_4978
RagB/SusD domain-containing protein (576 aa)
   
          0.696
Slin_6228
RagB/SusD domain-containing protein (511 aa)
   
          0.665
Slin_6432
RagB/SusD domain-containing protein (542 aa)
   
          0.651
Slin_2397
Hypothetical protein (571 aa)
 
          0.645
Slin_4634
Hypothetical protein (288 aa)
   
          0.600
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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