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Slin_2407 protein (Spirosoma linguale) - STRING interaction network
"Slin_2407" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2407AraC family transcriptional regulator (399 aa)    
Predicted Functional Partners:
Slin_2406
Acyltransferase 3 (395 aa)
 
          0.737
Slin_0623
AraC family transcriptional regulator (306 aa)
   
          0.667
Slin_2199
AraC family transcriptional regulator (264 aa)
   
          0.639
Slin_0422
Signal transduction histidine kinase LytS (340 aa)
 
     
  0.611
Slin_2241
Signal transduction histidine kinase LytS (364 aa)
 
     
  0.609
Slin_3925
Signal transduction histidine kinase LytS (354 aa)
 
     
  0.569
Slin_3756
AraC family transcriptional regulator (285 aa)
   
          0.525
Slin_4043
AraC family transcriptional regulator (303 aa)
 
          0.521
Slin_6599
AraC family transcriptional regulator (193 aa)
   
          0.495
Slin_2408
Signal peptide peptidase SppA, 67K type (589 aa)
              0.494
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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