STRINGSTRING
Slin_2408 protein (Spirosoma linguale) - STRING interaction network
"Slin_2408" - Signal peptide peptidase SppA, 67K type in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2408Signal peptide peptidase SppA, 67K type (589 aa)    
Predicted Functional Partners:
Slin_2411
Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) (248 aa)
 
        0.711
Slin_3522
TonB family protein (150 aa)
   
          0.570
araB
L-ribulokinase (544 aa)
       
      0.567
Slin_2409
Inorganic diphosphatase (200 aa)
              0.565
Slin_3523
TonB family protein (143 aa)
   
          0.545
Slin_5378
TonB family protein (156 aa)
   
          0.540
Slin_0543
DNA polymerase I (1024 aa)
   
   
  0.533
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 (339 aa)
 
          0.499
Slin_2407
AraC family transcriptional regulator (399 aa)
              0.494
Slin_5663
RNA binding S1 domain-containing protein (595 aa)
 
        0.491
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]