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Slin_2423 protein (Spirosoma linguale) - STRING interaction network
"Slin_2423" - Double-stranded RNA/RNA-DNA hybrid binding protein-like protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2423Double-stranded RNA/RNA-DNA hybrid binding protein-like protein (212 aa)    
Predicted Functional Partners:
Slin_4096
Hypothetical protein (164 aa)
   
          0.659
Slin_6626
Hypothetical protein (173 aa)
   
          0.636
Slin_2884
Alpha amylase (565 aa)
   
          0.630
Slin_2314
DoxX family protein (380 aa)
   
          0.595
Slin_2040
Sporulation domain-containing protein (380 aa)
   
          0.583
Slin_6005
Phosphoribosylformylglycinamidine cyclo-ligase (389 aa)
   
          0.573
Slin_2424
Beta-lactamase (322 aa)
              0.562
Slin_5340
TonB-dependent receptor plug (814 aa)
   
          0.515
Slin_1309
Hypothetical protein (614 aa)
   
          0.489
Slin_6518
Hypothetical protein (309 aa)
   
          0.473
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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