STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2451PFAM: Protein of unknown function DUF2490; KEGG: lpp:lpp0035 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Slin_2450
PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: spe:Spro_4849 pyrrolo-quinoline quinone.
       0.500
Slin_6246
KEGG: aci:ACIAD3520 hypothetical protein.
 
    0.481
Slin_5164
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00858 TonB-dependent receptor.
  
     0.477
Slin_5223
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1194 major facilitator transporter.
  
     0.457
Slin_0301
Hypothetical protein; KEGG: rme:Rmet_0614 outer membrane autotransporter barrel.
  
     0.450
Slin_2382
KEGG: mno:Mnod_0281 protein of unknown function DUF839.
  
     0.444
Slin_5896
Hypothetical protein.
  
     0.428
Slin_3994
PFAM: regulatory protein TetR; KEGG: azc:AZC_4590 transcriptional regulator.
 
     0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.