STRINGSTRING
Slin_2459 protein (Spirosoma linguale) - STRING interaction network
"Slin_2459" - Polysaccharide deacetylase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2459Polysaccharide deacetylase (318 aa)    
Predicted Functional Partners:
Slin_3862
Family 2 glycosyl transferase (403 aa)
 
   
  0.876
Slin_1027
Family 2 glycosyl transferase (408 aa)
 
   
  0.843
Slin_3861
Family 2 glycosyl transferase (397 aa)
 
   
  0.834
Slin_6620
Family 2 glycosyl transferase (508 aa)
   
   
  0.810
Slin_3853
Family 2 glycosyl transferase (396 aa)
   
   
  0.810
Slin_2236
Family 2 glycosyl transferase (343 aa)
   
   
  0.810
Slin_2011
Family 2 glycosyl transferase (335 aa)
   
   
  0.810
Slin_2458
Family 2 glycosyl transferase (340 aa)
 
   
  0.803
Slin_4676
Polysaccharide deacetylase (322 aa)
   
          0.757
Slin_4362
Group 1 glycosyl transferase (390 aa)
 
     
  0.640
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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