STRINGSTRING
Slin_2483 protein (Spirosoma linguale) - STRING interaction network
"Slin_2483" - Histone deacetylase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2483Histone deacetylase (300 aa)    
Predicted Functional Partners:
Slin_4120
ATPase AAA (466 aa)
   
    0.950
Slin_1459
ATP-binding protein; Molecular chaperone. Has ATPase activity (610 aa)
     
  0.945
Slin_3350
SNF2-like protein (1127 aa)
   
  0.942
Slin_6180
SNF2-like protein (1003 aa)
     
  0.933
Slin_5625
SNF2-like protein (1185 aa)
     
  0.933
Slin_3414
Helicase (1127 aa)
     
  0.933
Slin_5853
Uracil phosphoribosyltransferase (215 aa)
   
    0.908
Slin_2228
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (310 aa)
     
  0.861
Slin_1074
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (634 aa)
     
  0.861
Slin_0324
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (311 aa)
     
  0.861
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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