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Slin_2499 protein (Spirosoma linguale) - STRING interaction network
"Slin_2499" - XRE family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2499XRE family transcriptional regulator (101 aa)    
Predicted Functional Partners:
Slin_2500
Hypothetical protein (631 aa)
              0.692
Slin_5232
Transcriptional regulator (117 aa)
   
          0.546
Slin_2498
Hypothetical protein (36 aa)
              0.537
Slin_2501
Hypothetical protein (329 aa)
              0.497
Slin_4014
PilT protein domain-containing protein (137 aa)
 
     
  0.474
Slin_2497
Hypothetical protein (245 aa)
              0.425
Slin_2496
Hypothetical protein (371 aa)
              0.425
Slin_2495
Hypothetical protein (204 aa)
              0.425
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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