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Slin_2504 protein (Spirosoma linguale) - STRING interaction network
"Slin_2504" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2504Short-chain dehydrogenase/reductase SDR (285 aa)    
Predicted Functional Partners:
Slin_2505
Hypothetical protein (179 aa)
         
  0.860
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
 
  0.728
Slin_2506
AraC family transcriptional regulator (294 aa)
 
 
      0.724
Slin_2508
PAS/PAC sensor hybrid histidine kinase (784 aa)
   
   
  0.669
Slin_2507
Fis family transcriptional regulator (488 aa)
              0.620
Slin_6109
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (718 aa)
   
 
  0.591
Slin_4424
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (811 aa)
   
 
  0.591
Slin_4538
Hypothetical protein (225 aa)
   
    0.526
Slin_5640
enoyl-CoA hydratase (151 aa)
   
 
  0.515
Slin_3533
MaoC domain-containing protein dehydratase (138 aa)
   
 
  0.515
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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