STRINGSTRING
Slin_2506 protein (Spirosoma linguale) - STRING interaction network
"Slin_2506" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2506AraC family transcriptional regulator (294 aa)    
Predicted Functional Partners:
Slin_2508
PAS/PAC sensor hybrid histidine kinase (784 aa)
   
 
  0.868
Slin_2507
Fis family transcriptional regulator (488 aa)
     
      0.845
Slin_2504
Short-chain dehydrogenase/reductase SDR (285 aa)
 
 
      0.724
Slin_6244
AraC family transcriptional regulator (304 aa)
   
          0.720
Slin_2505
Hypothetical protein (179 aa)
   
        0.645
Slin_2199
AraC family transcriptional regulator (264 aa)
   
          0.598
Slin_2180
AraC family transcriptional regulator (295 aa)
   
          0.574
Slin_4870
LysR family transcriptional regulator (298 aa)
   
   
  0.431
Slin_4312
LysR family transcriptional regulator (307 aa)
   
   
  0.431
gcvT
Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine (364 aa)
       
      0.420
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]