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Slin_2540 protein (Spirosoma linguale) - STRING interaction network
"Slin_2540" - Ribulose-phosphate 3-epimerase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2540Ribulose-phosphate 3-epimerase (223 aa)    
Predicted Functional Partners:
Slin_0976
Transketolase (285 aa)
   
  0.995
Slin_2594
Transketolase (681 aa)
  0.993
Slin_0975
Transketolase (317 aa)
 
   
  0.961
Slin_2701
RpiB/LacA/LacB family sugar-phosphate isomerase (143 aa)
       
  0.959
Slin_4914
Transketolase (801 aa)
   
 
  0.942
Slin_4083
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH (484 aa)
   
  0.928
Slin_4247
Carbohydrate kinase (492 aa)
 
   
  0.922
Slin_5165
Transketolase (326 aa)
     
 
  0.911
Slin_1236
Class II aldolase/adducin family protein (233 aa)
       
  0.904
Slin_6630
6-phosphogluconate dehydrogenase (298 aa)
         
  0.902
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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