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Slin_2551 protein (Spirosoma linguale) - STRING interaction network
"Slin_2551" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2551Outer membrane efflux protein (422 aa)    
Predicted Functional Partners:
Slin_2549
CzcA family heavy metal efflux pump (1046 aa)
 
          0.954
Slin_2550
RND family efflux transporter MFP subunit (359 aa)
 
          0.951
Slin_4058
CzcA family heavy metal efflux pump (1037 aa)
 
          0.820
Slin_2928
CzcA family heavy metal efflux pump (1032 aa)
 
          0.816
Slin_4057
RND family efflux transporter MFP subunit (374 aa)
 
          0.810
Slin_0747
RND family efflux transporter MFP subunit (405 aa)
 
          0.808
Slin_0918
RND family efflux transporter MFP subunit (366 aa)
 
          0.800
Slin_0917
CzcA family heavy metal efflux pump (1043 aa)
 
          0.747
Slin_5735
Hypothetical protein (275 aa)
   
          0.646
Slin_6551
RND family efflux transporter MFP subunit (319 aa)
 
          0.620
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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