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Slin_2556 protein (Spirosoma linguale) - STRING interaction network
"Slin_2556" - TetR family transcriptional regulator in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2556TetR family transcriptional regulator (208 aa)    
Predicted Functional Partners:
Slin_2557
RND family efflux transporter MFP subunit (356 aa)
              0.711
Slin_2558
Acriflavin resistance protein (1035 aa)
              0.618
Slin_2559
Outer membrane efflux protein (445 aa)
              0.596
Slin_2555
Hypothetical protein (264 aa)
              0.535
Slin_5505
RND family efflux transporter MFP subunit (375 aa)
 
          0.525
Slin_4493
RND family efflux transporter MFP subunit (367 aa)
 
          0.433
Slin_2560
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (291 aa)
              0.429
Slin_3718
RND family efflux transporter MFP subunit (353 aa)
 
          0.410
Slin_2554
Oxidoreductase domain-containing protein (365 aa)
              0.405
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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