STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2572PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pfo:Pfl01_4046 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (369 aa)    
Predicted Functional Partners:
Slin_4921
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase.
 
  
 0.841
Slin_2574
PFAM: WbqC-like family protein; KEGG: bte:BTH_I3212 WbnG.
 
  
 0.763
Slin_5840
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gur:Gura_3273 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.686
Slin_4262
TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: pca:Pcar_1142 nucleoside-diphosphate sugar epimerase.
  
 0.665
Slin_2573
Hypothetical protein.
  
  
 0.641
Slin_2571
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related.
  
  
 0.619
Slin_4071
KEGG: tbd:Tbd_0286 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.608
Slin_4077
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: sat:SYN_01113 UDP-N-acetyl-D-galactosamine 6- dehydrogenase.
 
  
 0.545
Slin_2575
KEGG: bte:BTH_I3214 transferase, putative.
 
   
 0.509
Slin_2570
PFAM: ABC-2 type transporter; KEGG: ppd:Ppro_2109 ABC-2 type transporter.
     
 0.493
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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