STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2690TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: glo:Glov_1631 drug resistance transporter, EmrB/QacA subfamily. (519 aa)    
Predicted Functional Partners:
Slin_2691
PFAM: secretion protein HlyD family protein; KEGG: pfl:PFL_4126 HlyD family secretion protein.
   0.927
Slin_4410
PFAM: secretion protein HlyD family protein; KEGG: vfi:VF_0878 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component.
   0.827
Slin_5288
Hypothetical protein; KEGG: gsu:GSU1480 EmrB/QacA family drug resistance transporter.
  
     0.770
Slin_2692
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02462 type I secretion outer membrane protein.
 
    0.677
Slin_2693
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gur:Gura_1130 MarR family transcriptional regulator.
       0.459
Slin_2689
PFAM: WD40 domain protein beta Propeller; KEGG: smt:Smal_2084 WD40 domain protein beta propeller.
       0.456
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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