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Slin_2785 protein (Spirosoma linguale) - STRING interaction network
"Slin_2785" - 4-amino-4-deoxy-L-arabinose transferase-like protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_27854-amino-4-deoxy-L-arabinose transferase-like protein (502 aa)    
Predicted Functional Partners:
Slin_0883
Hypothetical protein (107 aa)
   
          0.666
Slin_0462
Outer membrane efflux protein (451 aa)
   
          0.655
Slin_4772
Hypothetical protein (628 aa)
   
          0.650
Slin_2617
Outer membrane efflux protein (479 aa)
   
          0.623
Slin_6246
Hypothetical protein (512 aa)
   
          0.595
Slin_3134
Cytochrome C, class I (129 aa)
   
          0.588
Slin_4105
Hypothetical protein (314 aa)
   
          0.585
Slin_4113
Hypothetical protein (292 aa)
   
          0.581
Slin_5021
Adenylate/guanylate cyclase (348 aa)
   
          0.570
Slin_4112
Hypothetical protein (384 aa)
   
          0.567
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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