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Slin_2885 protein (Spirosoma linguale) - STRING interaction network
"Slin_2885" - Hypothetical protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2885Hypothetical protein (289 aa)    
Predicted Functional Partners:
Slin_2886
Hypothetical protein (326 aa)
              0.712
Slin_2884
Alpha amylase (565 aa)
              0.657
Slin_4078
Lipopolysaccharide biosynthesis protein (349 aa)
   
          0.634
Slin_4461
Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide (244 aa)
   
          0.593
Slin_4417
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (485 aa)
   
          0.559
Slin_4936
Lipopolysaccharide biosynthesis protein (362 aa)
   
          0.545
Slin_0277
TonB-dependent receptor plug (1096 aa)
   
          0.541
Slin_2887
Hypothetical protein (48 aa)
              0.525
Slin_5090
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (274 aa)
   
          0.491
Slin_0273
RagB/SusD domain-containing protein (582 aa)
   
          0.488
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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