STRINGSTRING
Slin_2917 protein (Spirosoma linguale) - STRING interaction network
"Slin_2917" - Xylose isomerase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2917Xylose isomerase (304 aa)    
Predicted Functional Partners:
Slin_2918
PA-phosphatase-like phosphoesterase (191 aa)
              0.859
Slin_3435
Oxidoreductase domain-containing protein (381 aa)
 
          0.732
Slin_2652
Xylose isomerase (283 aa)
 
          0.672
Slin_3337
Xylose isomerase (287 aa)
 
          0.669
Slin_6351
Xylose isomerase (279 aa)
 
          0.649
Slin_3491
Xylose isomerase (281 aa)
 
          0.644
Slin_0527
Xylose isomerase (289 aa)
 
          0.604
Slin_6613
Hypothetical protein (433 aa)
   
          0.593
Slin_2919
Family 2 glycosyl transferase (384 aa)
              0.573
Slin_1892
Xylose isomerase (296 aa)
 
          0.564
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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