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Slin_2928 protein (Spirosoma linguale) - STRING interaction network
"Slin_2928" - CzcA family heavy metal efflux pump in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2928CzcA family heavy metal efflux pump (1032 aa)    
Predicted Functional Partners:
Slin_0918
RND family efflux transporter MFP subunit (366 aa)
 
 
  0.957
Slin_0747
RND family efflux transporter MFP subunit (405 aa)
 
  0.957
Slin_2550
RND family efflux transporter MFP subunit (359 aa)
 
 
  0.957
Slin_4057
RND family efflux transporter MFP subunit (374 aa)
 
 
  0.956
Slin_3176
RND family efflux transporter MFP subunit (426 aa)
 
   
  0.896
Slin_1293
Outer membrane efflux protein (442 aa)
 
   
  0.825
Slin_2551
Outer membrane efflux protein (422 aa)
 
          0.816
Slin_4056
Outer membrane efflux protein (416 aa)
 
          0.805
Slin_6551
RND family efflux transporter MFP subunit (319 aa)
 
          0.695
Slin_6550
Outer membrane efflux protein (433 aa)
 
   
  0.642
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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