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Slin_2964 protein (Spirosoma linguale) - STRING interaction network
"Slin_2964" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2964ECF subfamily RNA polymerase sigma-24 subunit (195 aa)    
Predicted Functional Partners:
Slin_2965
Hypothetical protein (263 aa)
              0.859
Slin_0526
Hypothetical protein (354 aa)
   
          0.736
Slin_5852
Hypothetical protein (623 aa)
   
          0.666
Slin_3835
Hypothetical protein (137 aa)
   
          0.627
Slin_3265
Hypothetical protein (127 aa)
   
          0.624
Slin_0714
Hypothetical protein (109 aa)
   
          0.618
Slin_4453
Hypothetical protein (409 aa)
   
          0.615
Slin_2239
Hypothetical protein (333 aa)
   
          0.614
Slin_1939
Hypothetical protein (185 aa)
   
          0.611
Slin_3170
TonB-dependent receptor (827 aa)
   
          0.609
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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