STRINGSTRING
Slin_3004 protein (Spirosoma linguale) - STRING interaction network
"Slin_3004" - Type I phosphodiesterase/nucleotide pyrophosphatase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3004Type I phosphodiesterase/nucleotide pyrophosphatase (562 aa)    
Predicted Functional Partners:
Slin_3005
Fatty acid hydroxylase (269 aa)
 
        0.640
Slin_0314
X-Pro dipeptidyl-peptidase domain-containing protein (666 aa)
 
          0.524
Slin_2610
X-Pro dipeptidyl-peptidase domain-containing protein (629 aa)
 
          0.497
Slin_5609
PDZ/DHR/GLGF domain-containing protein (421 aa)
   
          0.491
tdk
Thymidine kinase (209 aa)
 
          0.487
Slin_1598
Na+/solute symporter (487 aa)
   
          0.459
Slin_5444
Peptidase S13 D-Ala-D-Ala carboxypeptidase C (400 aa)
   
          0.422
Slin_4475
TonB-dependent receptor (955 aa)
   
          0.420
Slin_4469
Peptidase S45 penicillin amidase (738 aa)
   
          0.409
Slin_2251
Major facilitator superfamily protein (439 aa)
   
        0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]