STRINGSTRING
Slin_3010 protein (Spirosoma linguale) - STRING interaction network
"Slin_3010" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3010Hypothetical protein (1129 aa)    
Predicted Functional Partners:
Slin_1221
RagB/SusD domain-containing protein (539 aa)
   
          0.727
Slin_0869
RagB/SusD domain-containing protein (503 aa)
   
          0.709
Slin_0107
RagB/SusD domain-containing protein (476 aa)
   
          0.707
Slin_5058
RagB/SusD domain-containing protein (493 aa)
   
          0.705
Slin_5654
RagB/SusD domain-containing protein (511 aa)
   
          0.684
Slin_1220
TonB-dependent receptor plug (1137 aa)
   
          0.679
Slin_4811
Hypothetical protein (510 aa)
   
          0.678
Slin_3035
Hypothetical protein (533 aa)
   
          0.672
Slin_4874
Hypothetical protein (1215 aa)
   
          0.664
Slin_3947
Hypothetical protein (514 aa)
   
          0.663
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]