STRINGSTRING
Slin_3012 protein (Spirosoma linguale) - STRING interaction network
"Slin_3012" - Alpha/beta hydrolase fold protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3012Alpha/beta hydrolase fold protein (257 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (359 aa)
   
        0.861
Slin_3013
uroporphyrin-III C/tetrapyrrole methyltransferase (233 aa)
   
        0.651
menD
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) (582 aa)
 
   
  0.625
Slin_5766
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (270 aa)
   
  0.614
Slin_6350
Class I and II aminotransferase (360 aa)
   
 
  0.531
Slin_5561
8-amino-7-oxononanoate synthase (395 aa)
   
 
  0.531
Slin_3535
Glycine C-acetyltransferase (434 aa)
   
 
  0.531
Slin_5148
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (79 aa)
     
 
  0.518
Slin_4413
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (77 aa)
     
 
  0.518
Slin_3014
Beta-lactamase (213 aa)
   
        0.507
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (11%) [HD]